Well in our case, because Sync is a native plug-in we created a hook that would wait/watch for the file to reappear before attempted further operations. For a script maybe set a timeout or check that the file exists / obtain a new variable containing it's location. ( i'm not sure what you're doing exactly or I could be more specific )
I'll see if I can get a crash log. The line I think it's crashing on is just
proj.save();
Earlier in the script I'm saving the project for the first time as a new name. Did you just save to a different name and then delete the old file?
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